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To explore evolutionary relationships among organisms, biologists construct and compare phylogenetic trees, not unlike the family trees traced for humans by genealogists. In recent years, the use of molecular data to build these trees and sophisticated computer-aided techniques to analyze them have led to a revolution in the study of cospeciation (the joint speciation of two or more lineages that are ecologically associated, such as hosts and parasites).

We are pleased to present the proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI 2003), which took place on September 15 20, 2003 in Budapest, Hungary. The WABI workshop was part of the four-conference meeting, ALGO 2003, which was locally organized by Dr. Jan os Csirik, Head of the Department of Computer Science, J ozsef Attila University, Budapest. See http: //www. conferences. hu/ALGO2003/algo_2003. htmfor more details. WABI focuses on discrete algorithms that address important problems in molecular biology, genomics, and genetics, that are founded on sound models,...