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This thesis details significant improvements in the understanding of the nuclear EMC effect and nuclear shadowing in neutrino physics, and makes substantial comparisons with electron scattering physics. Specifically, it includes the first systematic study of the EMC ratios of carbon, iron and lead to plastic scintillator of neutrinos. The analysis presented provides the best evidence to date that the EMC effect is similar between electrons and neutrinos within the sensitivity of the data. Nuclear shadowing is measured systematically for the first time with neutrinos. In contrast with the data...