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Biomedical Data Mining is an ever growing area of Natural Laguage Processing. This book provides an introduction to this field and its experimental account using machine learning techniques. It describes a novel method of automatic training data production using a biomedical ontology. This is an alternative to the traditional approaches involving labour-expensive manual data annotation. More specifically we address the task of gene name disambiguation. In biomedical literature same gene names tend to be used to refer to a number of entities, e.g. gene itself, RNA sequence, the protein...

The literary imagination may take flight on the wings of metaphor, but hard-headed scientists are just as likely as doe-eyed poets to reach for a metaphor when the descriptive need arises. Metaphor is a pervasive aspect of every genre of text and every register of speech, and is as useful for describing the inner workings of a "black hole" (itself a metaphor) as it is the affairs of the human heart. The ubiquity of metaphor in natural language thus poses a significant challenge for Natural Language Processing (NLP) systems and their builders, who cannot afford to wait until the problems of...