PCR Protocols

ISBN-13: 9781627038195 / Angielski / Miękka / 2014 / 348 str.

Daniel J Park

Opis

Known for flexibility and robustness, PCR techniques continue to improve through numerous developments, including the identification of thermostable DNA polymerases which exhibit a range of properties to suit given applications. PCR Protocols, Third Edition selects recently developed tools and tricks, contributed by field-leading authors, for the significant value that they add to more generally established methods. Along with the cutting-edge methodologies, this volume describes many core applications, such as PCR cloning and sequencing, expression, copy number or methylation profile analysis, 'DNA fingerprinting', diagnostics, protein engineering, interaction screening as well as a chapter highlighting workflow considerations and contamination control, crucial for all PCR methods. Written in the highly successful Methods in Molecular Biology(TM) series format, chapters include introductions to their respective topics, lists of the necessary reagents and materials, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, PCR Protocols, Third Edition seeks to further elucidate this essential technique while also providing core principles with broad applications for scientists of all backgrounds.

Recenzje

From the reviews of the third edition:

"This book describes recently developed tools such as PCR cloning and sequencing, expression ... and other important techniques crucial for all PCR methods. ... Students and researchers interested in learning latest methods in PCR will find this book extremely useful. ... This book presents cutting-edge methodologies crucial for all PCR methods. Given the rapid advances in the field of PCR methods, this third edition is essential and justifies replacement of the previous edition." (Omer Iqbal, Doody's Book Reviews, February, 2012)

"The book consists of 5 parts and 24 chapters. ... Third edition of 'PCR Protocols' represents very useful handbook written in form of original and modified PCR protocols. Since it provides suggestions for solution of basic research as well as clinical and diagnostic problems, it will probably find its place in many molecular biologylaboratories." (L'ubica Lacinová, General Physiology and Biochemistry, May, 2011)

Spis treści

Part I: PCR Husbandry 1. Setup of a PCR Laboratory Zaheer Khan Part II: Cloning and Sequencing 2. Long Range PCR with a DNA Polymerase Fusion Holly H. Hogrefe and Michael C. Borns 3. Isolation of Genomic Insertion Sites of Proviruses Using Splinkerette-PCR-Based Procedures Bin Yin 4. Lariat-Dependent Nested PCR for Flanking Sequence Determination Daniel J. Park 5. CODEHOP PCR and CODEHOP PCR Primer Design Jeannette P. Staheli, Richard Boyce, Dina Kovarik, and Timothy M. Rose 6. Sequencing of Difficult DNA Regions by SAM Sequencing Keith R. Mitchelson Part III: Expression, Epigenetic and Copy Number Analysis 7. A Global Single-Cell cDNA Amplification Method for Quantitative Microarray Analysis Kazuki Kurimoto and Mitinori Saitou 8. Quantitation of MicroRNAs by Real-Time RT-qPCR Caifu Chen, Ruoying Tan, Linda Wong, Richard Fekete, and Jason Halsey 9. High-Throughput SuperSAGE Hideo Matsumura, Kentaro Yoshida, Shujun Luo, Detlev H. Krüger, Günter Kahl, Gary P. Schroth, and Ryohei Terauchi 10. Deep Cap Analysis of Gene Expression (Deep CAGE) Junpei Kurosawa, Hiromi Nishiyori, and Yoshihide Hayashizaki 11. Linking Emulsion PCR Haplotype Analysis James G. Wetmur and Jia Chen 12. PAP-LMPCR: An Improved, Sequence-Selective Method for the In vivo Analysis of Transcription Factor Occupancy and Chromatin Fine Structure Richard Ingram, Arthur Riggs, and Constanze Bonifer 13. The Many Faces of MLPA Thomas Ohnesorg, Erin Turbitt, and Stefan J. White 14. Assessing Gene-Specific Methylation Using HRM-Based Analysis Ee Ming Wong and Alexander Dobrovic Part IV: Probes and Assays 15. Alu PCR Maurizio Cardelli 16. Asynchronous PCR Caifu Chen, David Ruff, and Jason Halsey 17. Novel Applications of PCR through the Use of DNA Substrates Stuart M. Wilson 18. Enhanced Solid Phase PCR for Increased Loading of Amplicon onto Solid Support Daniel J. Park 19. Application of Blocking Oligonucleotides to Improve Signal to Noise Ratio in a PCR Hege Vestheim, Bruce E. Deagle, and Simon N. Jarman Part V: Engineering and Screening 20. Asymmetric Overlap Extension PCR Method for Site-Directed Mutagenesis Yue-Hua Xiao and Yan Pei 21. Ribosome Display: A Technology for Selecting and Evolving Proteins from Large Libraries Birgit Dreier and Andreas Plückthun 22. GLOBE: Analysis of DNA-Protein Interaction Analysis Takaaki Kojima and Hideo Nakano 23. PCR DNA-Array Profiling of DNA-Binding Transcription Factor Activities in Adult Mouse Tissues Yimin Sun, Jing Cheng, and Keith R. Mitchelson 24. Nucleotide Exchange and Excision Technology (NExT) DNA Shuffling and Directed Evolution Janina Speck, Sabine C. Stebel, Katja M. Arndt, and Kristian M. Müller

Blurb

Known for flexibility and robustness, PCR techniques continue to improve through numerous developments, including the identification of thermostable DNA polymerases which exhibit a range of properties to suit given applications. PCR Protocols, Third Edition selects recently developed tools and tricks, contributed by field-leading authors, for the significant value that they add to more generally established methods. Along with the cutting-edge methodologies, this volume describes many core applications, such as PCR cloning and sequencing, expression, copy number or methylation profile analysis, ‘DNA fingerprinting’, diagnostics, protein engineering, interaction screening as well as a chapter highlighting workflow considerations and contamination control, crucial for all PCR methods. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary reagents and materials, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, PCR Protocols, Third Edition seeks to further elucidate this essential technique while also providing core principles with broad applications for scientists of all backgrounds.