Adaptation to Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya

ISBN-13: 9789048169146 / Angielski / Miękka / 2010 / 576 str.

Nina Gunde-Cimerman; Aharon Oren; Ana Plemenitas

Opis

Salt is an essential requirement of life. Already from ancient times (e. g., see the books of the Bible) its importance in human life has been known. For example, salt symbolizes destruction (as in Sodom and Gomorra), but on the other hand it has been an ingredient of every sacrifice during the Holy Temple periods. Microbial life in concentrated salt solutions has fascinated scientists since its discovery. Recently there have been several international meetings and books devoted entirely to halophiles. This book includes the proceedings of the Halophiles 2004 conference held in Ljubljana, Slovenia, in September 2004 (www. u- lj. si/ bfbhaloph/index. html). This meeting was attended by 120 participants from 25 countries. The editors have selected presentations given at the meeting for this volume, and have also invited a number of contributions from experts who had not been present in Ljubljana. This book complements Halophilic Microorganisms, edited by A. Ventosa and published by Springer-Verlag (2004), Halophilic Microorganism and their Environments by A. Oren (2002), published by Kluwer Academic Publishers as volume 5 of Cellular Origins, Life in Extreme Habitats and Astrobiology (COLE), and Microbiology and Biogeochemistry of Hypersaline Environments edited by A. Oren, and published by CRC Press, Boca Raton (1999). Salt-loving (halophilic) microorganisms grow in salt solutions above seawater salinity ( 3. 5% salt) up to saturation ranges (i. e., around 35% salt). High concentrations of salt occur in natural environments (e. g."

Recenzje

Review byChristopher Rensing entitled "Adriatic get-together produces salt-lovers delight"
Saline Systems 2005, 1:6 doi: 10.1186/1746-1448-1-6
Publication date: 17 August 2005

Starting a new on-line journal such as Saline Systems presents the opportunity for editors and potential readers to familiarize themselves with recent ongoing research in this rather broad field. What better way to begin than to summarize new results and developments presented at a well-attended and received scientific meeting? This is the idea behind "Adaptations to life at high salt concentrations in Archaea, Bacteria and Eukarya" which explores the many-fold aspects of life under these extreme conditions. The book was initiated at an international conference "Halophiles 2004" in Ljubljana, Slovenia, in September 2004 organized by Nina Gunde-Cimerman and Ana Plemenitas, a conference which has been held roughly every three years since 1978 (see http://salinesystems.org/content/1/1/6/figures/F1). The first conference was held in Rehovot/Israel and organized by Roy Caplan and Margaret Ginzburg. A comparison of topics covered by conferences on halophilic microorganisms twenty years ago and more recently reflects how rapidly this field has expanded. The 34 chapters capture the current breadth of the field and illustrate the versatility of these microorganisms. Halophilic environments extend from the Great Salt Lake to the Dead Sea but also to unexpected environments such as arctic regions, deep-sea hypersaline brines and possibly habitats in outer space. The study of extremophiles might also give clues for a better understanding of the origin of life here on earth but possibly also elsewhere hence the link to exobiology explored by Joseph Seckbach and Rocco Mancinelli in this volume.

If one were to give out last years Oscars for salt-lovers, "Two square off" would certainly take home the honor. In my and certainly also the media's opinion, the cultivation and initial characterization of Walsby's square archaeon was a major accomplishment. Henk Bolhuis' fun to read article certainly succeeds in capturing the fascination of this seemingly strange but widespread microbe. How did he finally manage to get a hold on 'Haloquadratum walsbyi', nothing fancy, just using agarose instead of agar plates. Seemingly simple, it certainly hides many frustrating hours spent in the lab. Another successful strategy was employed by David Burns out of Mike Dyall-Smith's lab using dilution cultures in natural saltern water with just a few supplements. Interestingly, they both managed to observe large sheets of Walsby's square archaeon, measuring approximately 40 x40µm. If these structures constitute single cells, or readily dissolve into multiple square components under the conditions used by D. Burns, this will certainly be an area of future studies.

Studying microbial communities in the natural environment is inherently difficult due to technical and biological aspects. One advantage of microbial ecology studies in extreme environments is the relatively low diversity of the respective microbial communities. It is therefore not surprising that this invitation to study the diversity and composition in hypersaline environments was followed up by a number of scientists and the results from Great Salt Lake, the Dead Sea, salterns in California and Spain and ancient salt deposits summarized here. In addition, often neglected predators such as Haloviruses or Protozoa feeding on halophilic archaea and bacteria are not only described but also evaluated on their impact on microbial communities in three chapters.

The physiology of halophilic and halotolerant organisms is also covered in great detail and insight in this volume. How do they do this, how can any organism survive under these conditions? To survive and thrive in a hypersaline environment, microorganisms needed to develop mechanisms of osmoadaptation and salt tolerance. In nature, different solutions brought about by convergent evolution to a low water activity environment can be found in various organisms able to withstand high salt conditions. Not only haloarchaea, as initially thought, but also bacteria accumulate high internal concentrations of potassium and chloride. An important, environmentally relevant representative, Salinibacter ruber, is described in detail from a genomic and environmental perspective. Another surprising aspect of the physiology of some halophiles is their requirement for chloride. A more detailed account is given in an interesting chapter on chloride requirement in moderately halophilic bacteria by Volker Müller and Stefan Saum. Their initial hypothesis for the necessity of chloride is not as counterion as one might intuitively believe but as an inducer for a novel regulatory network. However, if that were true, wouldn't one expect mutants in the signaling pathway without a requirement for chloride?

Transcriptional regulation in haloarchaea was also described using gas vesicle synthesis as an example. We are clearly only at the beginning of understanding the largely unexplored interplay between bacterial-like repressors and an eukaryae-like transcription machinery. This, I believe, is one of the surprises from the recent or on-going genome sequencing efforts. Brian Berquist and coworkers provide a genome-wide COG-based inventory of regulators, basal transcriptional machinery, and DNA replication and repair systems in the two completely sequenced haloarchaea, Halobacterium sp. NRC-1 and Haloarcula marismortui. This showed nearly all the regulators to be bacterial, along with a few (laterally transferred?) components of the DNA replication and repair systems. These aspects of haloarchaeal genetics are likely to be the subject of significant interest in the near future.

Ana Plemenitas, Nina Gunde-Cimerman and their respective group members have to be commended for their Herculean effort setting the record straight on fungal response to low water activity and their contribution and impact in hypersaline environments in three extensive and well-researched chapters.

Is this a book worth having: by all means YES! Overall it contains a wealth of information that is really useful having as a resource. In addition, research strategies and thoughtful discussions are presented in chapters such as Diversity of Microbial Communities: The Case of Solar Salterns by Carlos Pedros-Alio. This methodology is often at least as important as mere facts and findings, especially for the hopefully intended target audience of graduate students and postdoctoral researchers

Spis treści

Foreword; J. Seckbach Introduction; N. Gunde-Cimerman, A. Oren, A. Plemenitaš SECTION I. THE ENVIRONMENTS AND THEIR DIVERSITY Microbial diversity of Great Salt Lake; B.K. Baxter, C.D. Litchfield, K. Sowers, J.D. Griffith, P.A. DasSarma; S. DasSarma Microbial communitites in the Dead Sea – past, present and future; A. Oren, I. Gavrieli, J. Gavrieli, M. Kohen, J. Lati, M. Aharoni Microscopic examination of microbial communitires along a salinity gradient in saltern evaporation poonds: a ‘halophilic safari’; A. Oren The microbial diversity of a solar saltern on San Francisco Bay; C.D. Litchfield, M. Sikaroodi, P.M. Gillivet Diversity of microbial communities: the case of solar salterns; C. Pedrós-Alió Isolation of viable haloarchaea from ancient salt deposits and application of fluorescent stains for in situ detection of halophiles in hypersaline environmental samples and model fluid inclusions; S. Leuko, A. Legat, S. Fendrihan, H. Wieland, C. Radax, C. Gruber, M. Pfaffenhuemer, G. Weidler, H. Stan-Lotter Hydrocarbon degredation under hypersaline conditions. Some facts, some experiments and many open questions; H. Patzelt The relevance of halophiles and other extremophiles to Martian and extraterrestrial environments; J. Seckbach Halophiles: a terrestrial analog for life in brines on Mars – Halophiles on Mars; R.L. Mancinelli SECTION II. ARCHAEA Comparative genomic survey of information transfer systems in two diverse extremely halophilic Archaea, Halobacterium sp. strain NRC-1 and Haloarcula marismortui; B.R. Berquist, J. Soneja, S. DasSarma Walsby's square archaeon; it's hip to be square but even more hip to be culturable; H. Bolhuis Gene regulation and the initiation of translation inhalophilic Archaea; F. Pfeifer, P. Zimmermann, S. Scheuch, S. Sartorius-Neef Protein translation, targeting and translocation in Haloferax volcanii; J. Eichler, G. Ring, V. Irihimovitch, T. Lichi, I. Tozik, Z. Konrad Enzymes of halophilic Archaea. Recent findings on ureases and nucleoside diphosphate kinases; T. Mizuki, R. Usami, M. Kamo, M. Tanokura, M. Kamekura Osmoadaptation in methanogenci Archaea: recent insights from a genomic perspective; K. Pflüger, H. Wieland, V. Müller SECTION III. BACTERIA Salinibacter ruber: genomics and biogeography; J. Antón, A. Peña, M. Valens, F. Santos, F.-O. Glöckner, M. Bauer, J. Dopazo, J. Herrero, R. Rosselló-Mora, R. Amann What we can deduce about metabolism in the moderate halophile Chromohalobacter salexigens from its genomic sequence; L.N. Csonka, K. O'Connor, F. Larimer, P. Richardson, A. Lapidus, A.D. Ewing, B.W. Goodner, A. Oren K+ transport and its role for osmoregulation in a halophilic memberof the Bacteria domain: characterization of the K+ uptake systems from Halomonas elongate; H.-J. Kunte The chloride regulon of Halobacillus halophilus: a novel regulatory network for salt perception and signal transduction in bacteria; V. Müller, S.H. Saum Biosynthesis of the compatible solute mannosylglycerate from hyperthermophiles to mesophiles. Genes, enzymes and evolutionary perspectives; M.S. da Costa, N. Empadinhas Genes and enzymes of ectoine biosynthesis in the haloalkaliphilic obligate methanotroph 'Methylomicrobium alcaliphilum 20Z'; A.S. Reshetnikov, V.N. Khmelenina, I.I. Mustakhimov, Y.V. Ryzhmanova, Y.A. Trotsenko Halophilic Archaea and Bacteria as a source of extracellular hydrolytic enzymes; A. Ventosa, C. Sánchez-Porro, S. Martín, E.