Working with Perl presents an extended tutorial introduction to programming through Perl, the premier programming technology of the bioinformatics community. Even...

With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over...

Many programmers code by instinct, relying on convenient habits or a "style" they picked up early on. They aren't conscious of all the choices they make, like how they format their source, the names they use for variables, or the kinds of loops they use. They're focused entirely on problems they're solving, solutions they're creating, and algorithms they're implementing. So they write code in the way that seems natural, that happens intuitively, and that feels good.

But if you're serious about your profession, intuition isn't enough. Perl Best Practices author Damian Conway...

Perl soared to popularity as a language for creating and managing web content, but with LWP (Library for WWW in Perl), Perl is equally adept at consuming information on the Web. LWP is a suite of modules for fetching and processing web pages.The Web is a vast data source that contains everything from stock prices to movie credits, and with LWP all that data is just a few lines of code away. Anything you do on the Web, whether it's buying or selling, reading or writing, uploading or downloading, news to e-commerce, can be controlled with Perl and LWP. You can automate Web-based purchase...

XML is a text-based markup language that has taken the programming world by storm. More powerful than HTML yet less demanding than SGML, XML has proven itself to be flexible and resilient. XML is the perfect tool for formatting documents with even the smallest bit of complexity, from Web pages to legal contracts to books. However, XML has also proven itself to be indispensable for organizing and conveying other sorts of data as well, thus its central role in web services like SOAP and XML-RPC.As the Perl programming language was tailor-made for manipulating text, few people have disputed...

Given Perl's natural fit for web applications development, it's no surprise that Perl is also a natural choice for web services development. It's the most popular web programming language, with strong implementations of both SOAP and XML-RPC, the leading ways to distribute applications using web services. But books on web services focus on writing these applications in Java or Visual Basic, leaving Perl programmers with few resources to get them started. Programming Web Services with Perl changes that, bringing Perl users all the information they need to create web services using...

Perl is a very powerful tool for Oracle database administrators, but too few DBAs realize how helpful Perl can be in managing, monitoring, and tuning Oracle databases. Whether you're responsible for Oracle9i, Oracle8i, or earlier databases, you'll find Perl an invaluable addition to your database administration arsenal.You don't need to be a Perl expert to use the excellent applications and scripts described in Perl for Oracle DBAs. The book explains what you need to know about Perl, provides a wealth of ready-to-use scripts developed especially for Oracle DBAs, and suggests many resources...

Graphics programmers aren't the only ones who need to be proficient with graphics. Web and applications programmers know that a dull web page can be quickly transformed into one that's interesting and lively with the use of well-planned graphics. And fortunately, you don't need the skills of a fulltime graphics programmer to use graphics effectively. From access counters and log report graphs to scientific plots and on-the-fly animated GIFs, graphics scripting is within the grasp of most web programmers. Using open source software, like Perl, you have the power to dynamically generate...

Mason doesn't aim to be the one true Perl-based templating system for building web sites, but it's led many programmers to abandon their custom solutions when they've seen how much easier using Mason can be. It's a powerful, open source, Perl-based web site development and delivery engine, with features that make it an ideal backend for high load sites serving dynamic content. Mason uses a concept called components: a mix of HTML, Perl, and special Mason commands. These components can be entire web pages, or bits of HTML that can be embedded in top-level components. Shared and reusable,...

mod_perl embeds the popular programming language Perl in the Apache web server, giving rise to a fast and powerful web programming environment. Practical mod_perl is the definitive book on how to use, optimize, and troubleshoot mod_perl.

New mod_perl users will learn how to quickly and easily get mod_perl compiled and installed. But the primary purpose of this book is to show you how to take full advantage of mod_perl: how to make a mod_perl-enabled Web site as fast, flexible, and easily-maintainable as possible. The authors draw from their own personal experience in the...

This complete guide to the Perl programming language ranges widely through the Perl programmer's universe, gathering together in a convenient form a wealth of information about Perl itself and its application to CGI scripts, XML processing, network programming, database interaction, and graphical user interfaces. The book is an ideal reference for experienced Perl programmers and beginners alike.With more than a million dedicated programmers, Perl is proving to be the best language for the latest trends in computing and business, including network programming and the ability to create and...

In its first five years of existence, The Perl Journal ran 247 articles by over 120 authors. Every serious Perl programmer subscribed to it, and every notable Perl guru jumped at the opportunity to write for it. TPJ explained critical topics such as regular expressions, databases, and object-oriented programming, and demonstrated Perl's utility for fields as diverse as astronomy, biology, economics, AI, and games. The magazine gave birth to both the Obfuscated Perl Contest and the Perl Poetry contest, and remains a proud and timeless achievement of Perl during one of its most exciting...

The Perl Journal (TPJ) did something most print journals aspire to, but few succeed. Within a remarkable short time, TPJ acquired a cult-following and became the voice of the Perl community. Every serious Perl programmer subscribed to it, and every notable Perl guru jumped at the opportunity to write for it. Back issues were swapped like trading cards. No longer in print format, TPJ remains the quintessential spirit of Perl--a publication for and by Perl programmers who see fun and beauty in an admittedly quirky little language.Games, Diversions, and Perl...

Find a Perl programmer, and you'll find a copy of Perl Cookbook nearby. Perl Cookbook is a comprehensive collection of problems, solutions, and practical examples for anyone programming in Perl. The book contains hundreds of rigorously reviewed Perl "recipes" and thousands of examples ranging from brief one-liners to complete applications.The second edition of Perl Cookbook has been fully updated for Perl 5.8, with extensive changes for Unicode support, I/O layers, mod_perl, and new technologies that have emerged since the previous edition of the book. Recipes have...

With a worldwide community of users and more than a million dedicated programmers, Perl has proven to be the most effective language for the latest trends in computing and business.

Every programmer must keep up with the latest tools and techniques. This updated version of Advanced Perl Programming from O'Reilly gives you the essential knowledge of the modern Perl programmer. Whatever your current level of Perl expertise, this book will help you push your skills to the next level and become a more accomplished programmer.

O'Reilly's most high-level Perl tutorial to date,...

Among the many different approaches to "templating" with Perl--such as Embperl, Mason, HTML:: Template, and hundreds of other lesser known systems--the Template Toolkit is widely recognized as one of the most versatile. Like other templating systems, the Template Toolkit allows programmers to embed Perl code and custom macros into HTML documents in order to create customized documents on the fly. But unlike the others, the Template Toolkit is as facile at producing HTML as it is at producing XML, PDF, or any other output format. And because it has its own simple templating language,...

Most Perl programmers know about the Perl debugger--the nifty little built-in utility that you can use to fully debug any programs that you write. Inside the interactive debugger environment, you're prompted for commands that let you examine your source code, set breakpoints, dump out function call stacks, change values of variables, and much more. It's so convenient that some programmers run it just to test out Perl constructs as they create a program. But although it's on their radar, not many Perl programmers take the time to master the debugger. That's where the Perl Debugger Pocket...

Distilling many years of Perl experience--including an insiders look at Perl development (the authors are members of the Perl 6 core development team)--Perl 6 and Parrot Essentials, 2nd Edition is an unparalleled preview of major changes in the widely-anticipated Perl 6. This sneak peek of what's coming in Perl includes succinct but thorough coverage of groundbreaking new developments in Parrot--the language-independent interpreter engine that will execute code written in the new Perl 6 language. Designed to be language independent, Parrot can be used to interpret other dynamic...

Is there any sexier topic in software development than software testing? That is, besides game programming, 3D graphics, audio, high-performance clustering, cool websites, et cetera? Okay, so software testing is low on the list. And that's unfortunate, because good software testing can increase your productivity, improve your designs, raise your quality, ease your maintenance burdens, and help to satisfy your customers, coworkers, and managers.

Perl has a strong history of automated tests. A very early release of Perl 1.0 included a comprehensive test suite, and it's only improved...