In this work, we propose a new and an integrated system to assist clinicians obtain trust-able results upon which they can decide accurate diagnosis and properly plan for treatment. The integrated system is composed of two main modules: 3-D reconstruction module and meshing and finite element module. The 3-D reconstruction module provides a robust means for visualization of different anatomical structures including the inner layers. The advantage of this tool is that it can generate the 3-D models using ordinary CT slices rather than -CT scans, which in turn makes it clinically applicable....