Genetic diversity of Karanja accessions were evaluated with Random Amplified Polymorphic DNA (RAPD) and Inter Simple Sequence Repeats (ISSR) markers. In present study low level of genetic diversity was observed among the karanj genotypes. Average RPI, PIC and MI value for RAPD primers were 2.09, 0.25 and 18.06 respectively; while for ISSR marker it was 0.66, 0.08 and 4.48 respectively. Genetic diversity analysis by Isozyme marker viz., POX (peroxidase), PPO (polyphenol oxidase ), EST (esterase) and SOD(superoxide dismutase) scores total 19 isozyme loci in 30 accessions of Karanja. Highest...