An ultimate goal of modern biology is to understand how the genetic blueprint of cells(genotype)determinesthestructure, function, andbehaviorofalivingorganism (phenotype). At the center of this scienti?c endeavor is characterizing the bioch- ical and cellular roles of proteins, the working molecules of the machinery of life. A key to understanding of functional proteins is the knowledge of their folded str- tures in a cell, as the structures provide the basis for studying proteins' functions and functional mechanisms at the molecular level. Researchers working on structure determination have...

Volume Two of this two-volume sequence presents a comprehensive overview of protein structure prediction methods and includes protein threading, De novo methods, applications to membrane proteins and protein complexes, structure-based drug design, as well as structure prediction as a systems problem. A series of appendices review the biological and chemical basics related to protein structure, computer science for structural informatics, and prerequisite mathematics and statistics.

The completion of sequences for over one hundred microbial genomes, with more than 200 additional projects now under way, has vastly multiplied the potential avenues for research using genetic, biochemical, and bioinformatics tools, and has created the new field of functional genomics. These advances have laid the foundation for understanding key principles applicable to human genome research.

Microbial Functional Genomics, the first comprehensive treatment of this subject, provides a much-needed synthesis of genome-wide studies on gene networks and functions, as well as the use of...

This volume contains about 40 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif identification, biological pathways and systems, and biomedical applications. There are also abstracts from the keynote addresses and invited talks.The papers cover not only theoretical aspects of bioinformatics but also delve into the application of new...

This proceedings volume contains 29 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif identification, biological pathways and systems, and biomedical applications.The papers not only cover theoretical aspects of bioinformatics but also delve into the application of new methods, with input from computation, engineering and biology...

The last couple of decades have witnessed a phenomenal growth in the World Wide Web. The Web has become a ubiquitous channel for information sharing and dissemination. This has created a whole new set of research challenges. This book describes several research contributions in an endeavor towards a better understanding of the Web. In the first part of this book, we address the problem of estimating the sizes of the Web and search engine indexes. This problem has drawn keen interests from both academic and search engine industry in recent years. We present both empirical methods and...

An ultimate goal of modern biology is to understand how the genetic blueprint of cells(genotype)determinesthestructure, function, andbehaviorofalivingorganism (phenotype). At the center of this scienti?c endeavor is characterizing the bioch- ical and cellular roles of proteins, the working molecules of the machinery of life. A key to understanding of functional proteins is the knowledge of their folded str- tures in a cell, as the structures provide the basis for studying proteins' functions and functional mechanisms at the molecular level. Researchers working on structure determination have...

Volume Two of this two-volume sequence presents a comprehensive overview of protein structure prediction methods and includes protein threading, De novo methods, applications to membrane proteins and protein complexes, structure-based drug design, as well as structure prediction as a systems problem. A series of appendices review the biological and chemical basics related to protein structure, computer science for structural informatics, and prerequisite mathematics and statistics.

This book provides a framework for computational researchers studying the basics of cancer through comparative analyses of omic data. It discusses how key cancer pathways can be analyzed and discovered to derive new insights into the disease and identifies diagnostic and prognostic markers for cancer. Chapters explain the basic cancer biology and how cancer develops, including the many potential survival routes. The examination of gene-expression patterns uncovers commonalities across multiple cancers and specific characteristics of individual cancer types. The authors also treat cancer as an...

This book provides a framework for computational researchers studying the basics of cancer through comparative analyses of omic data. Cancer Bioinformatics is designed for practitioners and researchers working in cancer research and bioinformatics.