1. Production of Engineered Minichromosome Vectors via the Introduction of Telomere Sequences Nathaniel Graham, Nathan Swyers, Jon Cody, Morgan McCaw, Changzeng Zhao, and James A. Birchler
2. Method for Biolistic Site-Specific Integration in Rice and Tobacco Catalyzed by Bxb1 Integrase
Ruyu Li, Zhiguo Han, Lili Hou, Gurminder Kaur, Qian Yin, and David W. Ow
3. Protocol for In Vitro Stacked Molecules Compatible with In Vivo Recombinase Mediated Gene Stacking
Weiqiang Chen and David W. Ow
4. Generation and Analysis of Transposon Ac/Ds-Induced Chromosomal Rearrangements in Rice Plants
Yuan Hu Xuan, Thomas Peterson, and Chang-deok Han
5. One-Step Generation of Chromosomal Rearrangements in Rice
Minoru Murata, Asaka Kanatani, and Kazunari Kashihara
6. Genome Elimination by Tailswap CenH3: In Vivo Haploid Production in Arabidopsis thaliana
Ravi Maruthachalam and Ramesh Bondada
7.Gametocidal Systems for Dissecting Wheat Chromosomes
Hisashi Tsujimoto
8. CRISPR/Cas-Mediated Site-Specific Mutagenesis in Arabidopsis thaliana Using Cas9 Nucleases and Paired Nickases
Simon Schiml, Friedrich Fauser, and Holger Puchta
9.Targeted Mutagenesis in Rice Using and TALENs and the CRISPR/Cas9 System Masaki Endo, Ayako Nishizawa-Yokoi, and Seiichi Toki
10. Seamless Genome Editing in Rice via Gene Targeting and Precise Marker Elimination
Ayako Nishizawa-Yokoi, Hiroaki Saika, and Seiichi Toki
11. Development of Genome Engineering Tools from Plant-Specific PPR Proteins Using Animal Cultured Cells Takehito Kobayashi, Yusuke Yagi, and Takahiro Nakamura
12. Chromosomal Allocation of DNA Sequences in Wheat Using Flow-Sorted Chromosomes Petr Cápal, Jan Vrána, Marie Kubaláková, Takashi R. Endo, and Jaroslav Doležel
13.Image Analysis of DNA Fiber and Nucleus in Plants Nobuko Ohmido, Toshiyuki Wako, Seiji Kato, and Kiichi Fukui
14.Detection of Transgenes on DNA Fibers
Fukashi Shibata
15. Three-Dimensional, Live-Cell Imaging of Chromatin Dynamics in Plant Nuclei Using Chromatin Tagging Systems
Takeshi Hirakawa and Sachihiro Matsunaga
16. Chromatin Immunoprecipitation for Detecting Epigenetic Marks on Plant Nucleosomes
Kiyotaka Nagaki
17. Mapping of T-DNA and Ac/Ds by TAIL-PCR to Analyze Chromosomal Rearrangements<
Satoru Fujimoto, Sachihiro Matsunaga, and Minoru Murata
This volume assembles protocols for chromosome engineering and genome editing in two recently developed approaches for manipulating chromosomal and genomic DNA in plants. The first approach is a “plant chromosome vector” system, which allows the introduction of desired genes or DNA into target sites on the chromosome vector, particularly by sequence-specific recombination. The second approach is “genome-editing,” which makes it possible to introduce mutations into any of the genes of DNA that we wish to change. In addition, this book also covers other related techniques used to accelerate progress in plant chromosome and genome engineering. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Cutting-edge and thorough, Chromosome and Genomic Engineering in Plants: Methods and Protocols provides a comprehensive source of protocols and other necessary information to anyone interested in this field of study.