1. Introduction2. A brief history3. Diversity, classification, and nomenclatureSection I.4. Archaeplastida5. Cryptista6. Haptista7. Stramenopiles8. Alveolata9. Rhizaria10. Amorphea, Opisthokonta, CRUMS, and Obazoa11. Amoebozoa12. Discoba13. MetamonadaSection II.14. Codon usage15. Endosymbionts16. Transfer of organelle and symbiont genes to the nucleus17. Lateral gene transfers18. Ectosymbionts19. Extrusomes20. Endomembrane system, vesicle transport21. Surface antigen variance22. Ciliophora genetics and inheritance, (epigenetics)23. Gene editing24. Mating type systems25. Cell-cell communication and recognition26. Cell shape and polarity27. Cytoskeletal elements (fine filaments, intermediate filaments, microtubular structures)28. Morphogenesis and cell cycle regulation29. Evolution and diversity of parasitism30. Ecology (functional groups, community structure, food webs and nutrient cycling)31. Glossary and Abbreviations32. Journals and Societies33. Bibliography (selected papers and books)