Phylogenomic Data Acquisition: Principles and Practice

ISBN-13: 9780367869809 / Angielski / Miękka / 2019 / 232 str.

W. Bryan Jennings

Opis

The genomes of many individuals can be assembled and analyzed using convenient and widely available computer programs running on every desktop or laptop computer. This rapid development has resulted in an entirely new sub-discipline of evolutionary biology called "phylogenomics," the integration of phylogenetic sequencing data and analyses imple

Spis treści

Introduction. PHYLOGENOMIC DATA CHARACTERISTICS AND ACQUISITION. Genomes, Molecular Evolution, and Molecular Markers. DNA Extraction. PCR Theory and Methodology. Loci Acquisition. Sanger and Next Generation DNA Sequencing. UNDERSTANDING AND MAKING GENE TREES: THE UNITS OF PHYLOGENOMIC ANALYSIS. Gene Tree Inference. Advanced Gene Tree Inference. PHYLOGENOMIC ANALYSIS: USING GENE TREES TO ANSWER EVOLUTIONARY QUESTIONS. Gene and Genome Evolution. Primer of Coalescent Theory. Species Tree Inference. Phylogeography I. Phylogeography II. DNA Barcoding and Forensics. Future Prospects. References. Glossary. Answers to End-of-chapter Questions.

O autorze

W. Bryan Jennings is professor and coordinator for the Molecular Laboratory of Biodiversity Research at Universidade Federal do Rio de Janeiro.