Paleogenomics: Genome-Scale Analysis of Ancient DNA [With eBook]

ISBN-13: 9783030047528 / Angielski / Twarda / 2019 / 427 str.

Charlotte Lindqvist; Om P. Rajora

Recenzje

"This book is intended for a variety of readers, including upper-level undergraduate and graduate students, professionals, and experts in the field, as well as anyone excited by the extraordinary insights that paleogenomics offers. This well-written volume is for well-read undergraduate students, and is definitely a good read for graduate students and professionals." (Lorin R. King, The Quarterly Review of Biology, Vol. 95 (4), December, 2020)

Spis treści

Preface. 

PART I – Perspectives and Applications

1 Paleogenomics: perspectives for population genomics and evolutionary biology       

Charlotte Lindqvist, University at Buffalo, NY

2 DNA degradation and applications - a current overview        

Nadin Rohland, Harvard Medical School, MA

3 Epigenetic patterns in paleogenomes            

Jakob Skou Pedersen, Aarhus University, Denmark

4 Ancient RNA             

Thomas Gilbert, University of Copenhagen, Denmark

PART II - Ancient Metagenomics and Pathogen Evolution

5 Ancient viruses (HIV)            

Hendrik Poinar, McMaster University, Canada

6 Ancient pathogen genomics              

Anne Stone, Arizona State University, AZ

7 Metagenomic reconstruction of ancient environments         

Eske Willerslev, University of Copenhagen, Denmark

8 Ancient peat sediments and reconstruction of floras              

Laura Parducci, Uppsala University, Sweden

PART III - Plant and Animal Paleogenomics

9 Archaeobotany and crop adaptation              

Robin Allaby, University of Warwick, UK

10 Reconstructing ancestral plant genomes      

David Sankorff, University of Ottawa, Canada; Victor Albert, University at Buffalo, NY

11 Extinction of ice age mammals          

Love Dalen, Swedish Museum of Natural History, Sweden

12 Evolution of animal domestication  

Greger Larson, University of Oxford, UK

13 Horse evolution       

Ludovic Orlando, University of Copenhagen, Denmark

14 Arctic mammals: Polar bear evolution            

Charlotte Lindqvist, University at Buffalo, NY

PART IV - Primate and Human Evolution

15 Primate paleogenomics       

George Perry, Penn State University, PA

16 Genomes of extinct hominins           

Svante Paabo, Marx Planck Institute for Evolutionary Anthropology, Germany

17 Structural variants in ancient genomes          

Omer Gokcumen, University at Buffalo, NY

Vincent Lynch, University of Chicago, IL; Stephan Schuster, Nanyang University, Singapore

19 High altitude adaptation in humans

Rasmus Nielsen, University of Berkeley, CA

Index. 

O autorze

Dr. Charlotte Lindqvist

Associate Professor

University at Buffalo (SUNY)

Department of Biological Sciences

Buffalo, NY

USA

Dr. Om P. Rajora

Professor

University of New Brunswick

Fredericton, NB E3C 5A3

Canada

Blurb

Advances in genome-scale DNA sequencing technologies have revolutionized genetic research on ancient organisms, extinct species, and past environments. When it is recoverable after hundreds or thousands of years of unintended preservation, “ancient DNA” (or aDNA) is often highly degraded, necessitating specialized handling and analytical approaches.  Paleogenomics defines the field of reconstructing and analyzing the genomes of historic or long-dead organisms, most often through comparison with modern representatives of the same or similar species. The opportunity to isolate and study paleogenomes has radically transformed many fields, spanning biology, anthropology, agriculture, and medicine. Examples include understanding evolutionary relationships of extinct species known only from fossils, the domestication of plants and animals, and the evolution and geographical spread of certain pathogens. This pioneering book presents a snapshot view of the history, current status, and future prospects of paleogenomics, taking a broad viewpoint that covers a range of topics and organisms to provide an up-to-date status of the applications, challenges, and promise of the field. This book is intended for a variety of readerships, including upper-level undergraduate and graduate students, professionals and experts in the field, as well as anyone excited by the extraordinary insights that paleogenomics offers.

.