Microarray Data Analysis: Methods and Applications

ISBN-13: 9781493931729 / Angielski / Twarda / 2016 / 226 str.

Pietro Hiram Guzzi

Opis

This volume covers a large area, from the description of methodologies for data analysis to the real application. Chapters focus on methodologies for preprocessing of microarray data, a survey of miRNA Data analysis, Cloud-based approaches, application of data mining techniques for data analysis, biclustering to query different datasets, web-based tool to analyze the evolution of miRNA clusters, application of biclustering to mine patterns of co-regulated genes ontologies, microarray and proteomic Data, Gene Regulatory Network Inference, Gene Regulatory Network methods, analysis of Mouse data for metabolomics studies, analysis of microRNA data in Multiple Myeloma, microarray data analysis in Gliobastomas, and microRNA data in Cardiogenesis.Written for the Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Microarray Data Analysis: Methods and Applications, Second Edition aims to ensure successful results in the further study of this vital field.

Spis treści

Di Wu and Michael P. Gantier

 

2) Methods and Techniques for miRNA Data Analysis

Francesca Cristiano and Pierangelo Veltri

 

3) Bioinformatics and Microarray Data Analysis on The Cloud

Barbara Calabrese and Mario Cannataro

 

4) Classification and Clustering on Microarray Data for Gene Functional Prediction using R

Liliana López Kleine, Rosa Montaño, and Francisco Torres-Avilés

 

5) Querying co-regulated genes on diverse gene expression datasets via biclustering

Mehmet Deveci, Onur Kucuktunc, Kernal Eren, Doruk Bozadag, Kamer Kaya, and Umit V. Catalyurek

 

 

6) MetaMirClust: Discovery and Exploration of Evolutionarily Conserved miRNA Clusters

Wen-Ching Chan and Wen-chang Lin

 

7) Analysis of Gene Expression Patterns using Biclustering

Swarup Roy, Dhruba K Bhattacharyya, and Jugal K Kalita

 

8) Using semantic Similarities and csbl.go for Analyzing Microarray Data

Kristian Ovaska

 

9) Ontology Based Analysis of Microarray Data

Giuseppe Agapito and Marianna Milano

 

10) Integrated Analysis of Transcriptomic and Proteomic Datasets Reveals Information on Protein Expressivity and Factors Affecting Translational Efficiency 

Jiangxin Wang, Gang Wu, Lei Chen, and Weiwen Zhang

 

11) Integrating Microarray Data and GRNs

L. Koumakis, G. Potamias, M. Tsiknakis, M. Zervakis, and V. Moustakis

 

12) Biological Network Inference from Microarray Data, Current Solutions and Assessments

Swarup Roy and Pietro Hiram Guzzi

 

13) A Protocol to Collect Specific Mouse Skeletal Muscles for Metabolomics Studies

Zhuohui Gan,  Zhenxing Fu, Jennifer C. Stowe, Frank L. Powell, and Andrew D. McCulloch

 

14) Functional Analysis of microRNA in Multiple Myeloma

Maria Teresa Di Martino, Nicola Amodio, Pierfrancesco Tassone, and Pierosandro Tagliaferri

 

15) Microarray Analysis in Glioblastomas

Kaumudi M. Bhawe and Manish K. Aghi

 

16) Analysis of microRNA Microarrays in Cardiogenesis

Diego Franco, Fernando Bonet, Francisco Hernandez-Torres, Estefania Lozano-Velasco, Francisco Esteban, and Amelia E Aranega