Methods in Actinobacteriology

ISBN-13: 9781071617304 / Angielski / Miękka / 2021 / 747 str.

Dhanasekaran Dharumadurai

Opis

This volume details techniques on the study of Isolation, characterization, and exploration of actinobacteria in industrial, food, agricultural, and environmental microbiology. Chapters cover a wide range of basic and advanced techniques associated with research on isolation, characterization and identification of actinobacteria in soil, sediment, estuarine, water, Saltpan, Mangroves, plants, lichens, sea weeds, sea grass, animals-crab, snail, shrimp. 

Authoritative and cutting-edge, Methods in Actinobacteriology aims to be a useful practical guide to researches to help further their study in this field.

Spis treści

1. Isolation of Actinobacteria from Soil and Marine Sediment Samples

Savitha, T., Ashraf Khalifa, and Sankaranarayanan A

 

2. Isolation of Actinobacteria from Water Sources

Tamalika Chakraborty, Sumana Roy, Dipanjan Mandal, Jeenatara Begum, and Abhijit Sengupta

 

3. Isolation of Actinobacteria from Deep Sea

AparanaKumari,K. V. and  Bhaskara Rao

 

4. Isolation of Actinobacteria from Estuary

Ashraf Khalifa and Sankaranarayanan A

 

5.Isolation of Actinobacteria from Sponges

Neethu Kamarudheen and K.V. Bhaskara Rao

 

6. Isolation of Actinobacteria from Shrimp

Shijila Rani A.S., Babu S., Anbukumaran A., Prakash P., Veeramani S., and Ambikapathy V.

 

7. Isolation of Actinobacteria from Coral Reef

Babu S., Shijila Rani A.S., Anbukumaran A, Praksah, P., and Ambikapathy V.

 

8. Isolation of Actinobacteria from Earthworm Cast

Anbukumaran, A.,Shijila Rani, A.S., Ambikapathy, V., Veeramani, S. Shanmgapriya, R. and Babu, S.

 

9. Isolation of Actinobacteria from Compost Samples

Savitha T, Ashraf Khalifa, and Sankaranarayanan A

 

10. Isolation of Gut Actinobacteria from Fecal and Tissue Samples

Priyanka Sarkar

 

11. Isolation of Gut Actinobacteria from Termites

Malavika S., Sahana Kranthi, Shishira Rao H. S., Shreyanka S. Moily, and Martin Paul A

 

12. Isolation of Gut Actinobacteria from Fishes

S. Thejaswini, Sruthy Jojy, Aditi Vijayan, and Martin Paul A

 

13. Isolation of Actinobacteria from Mangrove Plants

Babu S., Anbukumaran A., Ambikapathy V., Veeramani S., Shijila Rani A.S., and Prakash, P

 

14. Isolation of Actinobacteria from Seaweeds

Apsara S. Babu and K. V. Bhaskara Rao

 

15. Isolation of Actinobacteria from Hills

Veerapagu M,  Jeya KR, and Sankaranarayanan A

16. Isolation of Endophytic Actinobacteria from Flowers, Fruits, and Seeds of Higher Plants

Jayanthi.D, Martin Paul.A, and Leena Sebastian

 

17. Isolation of Actinobacteria from Desert Soils

Ashraf Khalifa and Sankaranarayanan, A.

 

18. Isolation of Epiphytic Actinobacteria from Rhizosphere of Spermatophytes

Shravya.S, Meghana.S.J  ,and Jayanthi.D

 

19. Isolation of Epiphytic Actinobacteria from Lichens

Shabeena Banu M.S., Nargis Begum T., G. Vinothini, D.Dhanasekaran, and Thajuddin N.

 

20. Isolation of Endophytic Actinobacteria from Lichens

Shabeena Banu M.S., Nargis Begum T., D. Dhanasekaran, and Thajuddin N.

 

21. Isolation of Psychrophilic and Psychrotolerant Actinobacteria

Manigundan.K, B. Abirami, V. Gopikrishnan, M. Radhakrishnan, and P.V. Bhaskar

 

22. Isolation of Halophilic Actinobacteria from different habitats

Martin Paul, A. and Jayanthi, D.

 

23. Isolation of Thermophilic Actinobacteria from Different Habitats

Pranjali Chole, Lokesh Ravi, and Kannabiran Krishnan

 

24. Isolation of Stone Dwelling Actinobacteria

Shabari Girish, Lokesh Ravi, and Kannabiran Krishnan

 

25. Cultivation Techniques of Rare Actinobacteria

Ramasamy Vijayakumar, Durairaj Thirumurugan, Alagappan Cholarajan, and Suresh Selvapuram Sudalaimuthu Raja

 

26. Chemo-taxonomical Characterization of Actinobacteria

Ramasamy Vijayakumar and Suresh S.S. Raja

 

27. Application of Bioinformatic Tools for Phylogenetic Analysis

Manigundan.K.,Jerrine Joseph, M. Radhakrishnan, Mary Shamya, and Wilson Aruni

 

28. Methods for Whole-genome Analysis of Actinobacteria through Bioinformatics Approaches

Indrani Sarkar, Gargi Sen, and Arnab Sen

 

29. Nanopore Based Long Read Sequencing Technology to Obtain Highly Contiguous Whole Genome Sequence of Actinobacterial Genomes like Streptomyces sp..

Sankaranarayanan Gomathinayagam, Loganathan Karthik, and KodiveriMuthukaliannan Gothandam

 

30. Mining genomes of Actinobacteria

Sushant Parab, Davide Corà, and Federico Bussolino

31. Comparative genomics of Actinobacteria

Sushant Parab,Davide Corà, and Federico Bussolino

 

32. Biosynthetic Gene Cluster Analysis in Micromonospora Species Using Antismash: Secondary Metabolite Genome Mining Pipeline

Manickasamy Mukesh Kumar, Narayanan Rajagopal, and Dhanasekaran Dharumadurai

 

33. Biosynthetic Gene Cluster Analysis in Actinobacterial Genera Streptomyces spp.

Markéta Macho, Daniela Ewe, Vishal Ahuja, Jihen Thabet, Avik Banerjee, Kumar Saurav, and Subhasish Saha

 

34. PCR based Determination of Secondary Metabolite Genes in Actinobacterial Cultures

K. Manigundan, B. Abirami, V. Gopikrishnan, Jerrine Joseph, and M. Radhakrishnan

 

35. Molecular Mass Determination of Bacteriocin by SDS-PAGE analysis

Santhosh Arul M,.Jayashankar, and HaripriyaDayalan

 

36. MALDI-TOF Analysis of Actinobacterial Peptides with Respect to MASCOT Database

Shanmugaraj Gowrishankar, Arumugam Kamaladevi, and Shunmugiah Karutha Pandian

 

37. Protocols for Preclinical Evaluation and Molecular Docking of Antimicrobial Compounds from Streptomyces sp.- Drug Likeliness Evaluation, ADME-Toxicity Investigation, Docking modes between the Ligand and the target Enzyme and Active Site Prediction

Anirudh Sreenivas B.K, Akshaya B, Lokesh Ravi, and Kannabiran Krishnan

 

38. Energy-based Pharmacophore Hypothesis Combined with Molecular Simulation Protocol for The Screening Of Bioactive Compounds From the Class of Actinobacteria

Thirunavukkarasu Muthu Kumar and KaruppasamyRamanathan

 

39. Receptor cavity-based approach combined with Autodock protocol for the screening of antiviral compounds from Streptomyces sp.

K. Rohini, and V. Shanthi

 

40. Pharmacophore Based Hypothesis Combined with Molecular Docking Protocol for the Screening Of Anti-Cancer Compounds from Streptomyces sp.

S. Saranyadevi, R. Priyanka and V. Shanthi

 

41. Methods of Identification and Validation of Drug Target

Jerrine Joseph, M. Radhakrishnan, K. Manigundan,V. Gopikrishnan, Mary Shamya, and Wilson Aruni

 

42. Transcriptome profiles of Streptomyces sp.

Sushant Parab, Davide Corà, and Federico Bussolino

 

43. Culture of Actinobacteria, Isolation, and Characterization of their Bioactive Compounds

 

Charles SanthanarajuVairappan

 

44. Miniaturized Production of Bioactive Extracts from Actinobacteria

B. Abirami, M. Radhakrishnan, K. Manigundan, Jerrine Joseph, V. Gopikrishnan, and R. Balagurunathan

 

45. Screening, Characterization, and Identification of Antibacterial Compounds From Actinobacteria

Savitha, T., Ashraf Khalifa, and Sankaranarayanan A

 

46. Isolation, Identification, and Screening of Polyene Antifungal Compound Producing Streptomyces sampsonii MDCE7 from agroforestry soil

Radhakrishnan Srinivasan and Varadharajan Mohan

 

47. Screening of Actinobacterial Cultures for Antimycobacterial Activity using Mycobacterium smegmatis

Ramachandran Chelliah and Deog-Hwan Oh

 

48. Screening of Actinobacterial Extracts/Compounds for Antimycobacterial Activity by Luciferase Reporter Phage (LRP) Assay 

Shuai Wei,Shucheng Liu, Ramachandran Chelliah, and Deog-Hwan Oh

 

49. Screening of Actinobacteria for Anti-TB Activity by MicroplateAlamarBlue Assay (MABA)

Shuai Wei, Shucheng Liu, Ramachandran Chelliaha, nd Deog-Hwan Oh

 

50. Screening of Actinobacteria for anti-TB Activity by Agar Dilution Assay

Ramachandran Chelliah and Deog-Hwan Oh

 

51. Antiplasmodial activity of Halophilic Actinobacteria

Dharumadurai Dhanasekaran and Saravanan Karthikeyan 

 

52. An invitroAntiamoebic Activity of Actinobacteria

KarthiyayiniBalakrishnan, Dhanasekaran Dharumadurai, Thirumurugan Ramasamy, and Muthuselvam Manickam

 

53. Screening for Antiviral Activity: MTT Assay

Ramachandran Chelliah, Fazle Elahi, and Deog-Hwan Oh

 

54. Screening for Anticancer Activity: 3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium (MTT) Assay

Ramachandran Chelliah and Deog-Hwan Oh

 

55. Screening for Anticancer Activity: Dual Staining Method

Ramachandran Chelliah and Deog-Hwan Oh

 

56. Screening for Anticancer Activity: Neutral Red Uptake Assay

 

Ramachandran Chelliah and Deog-Hwan Oh

 

57. Screening for Anticancer Activity: Lactic Acid Dehydrogenase Assay

Ramachandran Chelliah and Deog-Hwan Oh

 

58. Screening for Anticancer Activity: DNA Fragmentation Assay

InamulHasan Madar, Ghazala Sultan, Ramachandran Chelliah, and Deog-Hwan Oh

 

59. Screening for Anticancer Activity: Trypan Blue Exclusion Assay

InamulHasan Madar, Ghazala Sultan, Ramachandran Chelliah, and Deog-Hwan Oh

 

60. In vitro Evaluation of Antimitotic Properties Of Actinobacterial Extracts Using Onion Root Tip Assay

Gopikrishnan. V.,  M. Radhakrishnan, K. Manigundan, T. Shanmugasundaram, and Jerrine Joseph

 

61. Screening for Antioxidant Activity: Diphenylpicrylhydrazine (DPPH) Assay

Momna Rubab, Ramachandran Chelliah and Deog-Hwan Oh

 

62. Screening for Antioxidant Activity: Nitric Oxide Scavenging Assay

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

 

63. Screening for Antioxidant Activity: Metal Chelating Assay

Ramachandran Chelliah and Deog-Hwan Oh

 

64. Screening for Antioxidant Activity: Total Antioxidant Assay

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

 

65. Screening for Antioxidant Activity: Hydrogen Peroxide Scavenging Assay

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

 

66. In vitro Evaluation Of Actinobacterial Extracts For Anti Inflammatory Properties

B. Abirami, K. Manigundan, Mary Shamya, Jerrine Joseph, S. Shanmugasundaram, and M. Radhakrishnan

 

67. Screening and production of anti freeze Proteins from Actinobacteria

B. Abirami, M. Radhakrishnan, K. Manigundan, V. Gopikrishnan1, S.T. Somasundaram2, and P.V. Bhaskar

 

68. In vitro Evaluation of Actinobacterial Extracts for Immunomodulatory Properties

B. Abirami, K. Manigundan, M. Radhakrishnan, V. Gopikrishnan, Jerrine Joseph, T. Shanmugasundaram, and T. Somasundaram

 

69. Screening of Actinobacteria for Enzyme Inhibitor Activity

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

70. Screening of Actinobacteria for Quorum Sensing Inhibition

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

 

71. Screening of Actinobacterial Extracts for Anti-biofilm Activity

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

 

72. Screening of Actinobacteria for Microbial Induced Calcium Precipitation (MICP)

K. Manigundan, B. Abirami, V. Gopikrishnan, and M. Radhakrishnan

 

73. Immobilization of Actinobacterial Cells – Sodium Alginate and Calcium Chloride Method

Gopikrishnan, V., K. Manigundan, B. Abirami, and M. Radhakrishnan

 

74. Production of Actinobacteria Amylase by Fermentation in Solid State Using Residues Of Licuri Palm (Syagruscoronata)

 

Milena Santos Aguiar, Rafael Resende Maldonado, Andrea Limoeiro Carvalho, and Elizama Aguiar-Oliveira

 

75. Production Of Lipase By Actinobacteria

IsabelyFernanda Pizarro, HandrayFernandes de Souza, Janaínados Santos Ferreira, Rafael Resende Maldonad, and Eliana Setsuko Kamimura

 

76. Isolation And Cultivation Of Actinobacteria By Submerged Fermentation For The Production Of Keratinase

 

Rafael Resende Maldonado, TaísRosângelaCorreia Souza, Simone Kubeneck, Elizama Aguiar-Oliveira, and Helen Treichel

 

77. Screening of Cellulase from Actinobacteria

Varsha N Swamy,  M A Haneen, and M.Jayashankar

 

78. Screening of Pectinase from Actinobacteria

 M A Haneen, M.Jayashankar, And Varsha N Swamy

 

79. Screening of Protease from Actinobacteria

AshwithaGopal ,Varsha N Swamy,Santhosh Arul, and M.Jayashankar

 

80. Screening and analysis of Actinobacterial Bioherbicides For Weed
Management

Prem Anand K and Suthindhiran K

81. In vitro Assessment of Actinobacteria for Survivability Under Simulated Gastro-Intestinal Transit

G.Vinothini, M.S. ShabeenaBanu, S. Seema,  and D.Dhanasekaran

 

q82. In vitro Assessment of Actinobacteria for Survivability Under Simulated Gastro-Intestinal Transit

G.Vinothini, M.S. ShabeenaBanu, S. Seema,  and D.Dhanasekaran

 

83. Screening of Actinobacterial Probiotics by Anti-Pathogenic Activity Test

Peng Chen, Zhongkun Zhou, Yunhao Ma,Rentao Zhang, Mengze Sun

 

84. Screening and Analysis of Probiotic Actinobacteria in Poultry Farming

Mônica Roberta Mazalli and Rafael Resende Maldonado

 

85. Vitamin B12 Producing Actinobacteria as Probiotics for Poultry Production

Firdosh Shah and Mitesh Dwivedi

 

86. Qualitative and Quantitative Estimation of Phosphate Solubilizing Actinobacteria

Shreya Desaiand NatarajanAmaresan

 

87. Estimation of Nitrogen Production by Actinobacteria

Shreya Desaiand NatarajanAmaresan

 

88. Screening of Actinobacteria for Siderophore Production

Caroline Mercy Andrew Swamidoss, Ramachandran Chelliah, and Deog-Hwan Oh

 

89. Isolation and Screening of Symbiotic Actinobacteria From Root Nodules of Actinorhizal plant Casuarina sp

Dharumadurai Dhanasekaran and Saravanan Karthikeyan

 

90. Biocontrol Activity of Actinobacteria Against Plant Pathogens

Shreya Desaiand NatarajanAmaresan

 

91. An In vitro nematicidalactivity ofactinobacteria- Juvenile mortality and Egg hatching inhibition

Vijayakumar Vishnu Raja and DharumaduraiDhanasekaran

 

92. Estimation of Auxin Production by Actinobacteria

Shreya Desaiand NatarajanAmaresan

 

93. Screening of Actinobacteria for Mosquitocidal Activity

Caroline Mercy Andrew Swamidoss, Ramachandran Chelliah, and Deog-Hwan Oh

 

94. Extraction, Characterization, and Identification of Odorous Metabolites from Streptomyces

Dharumadurai Dhanasekaran, Saravanan Karthikeyan, Saravanan Chandraleka, Govindhan Sivaranjani, and Selvanathan Latha

 

95. Screening of Actinobacteria for Biosurfactant Production

Ramachandran Chelliah, Eric Banan-MwineDaliri, and Deog-Hwan Oh

 

96. Optimization and Characterization of Biosurfactant from Streptomyces

Vishal Ahuja, Markéta Macho, Jihen Thabet, Avik Banerjee, Daniela Ewe, Subhasish Saha, and Kumar Saurav

 

97. Production of Vitamin B12from Streptomyces species

Camil Rex M,Akshaya B, Lokesh Ravi, and Kannabiran Krishnan

 

98. Screening of Microbes for the Production of Pigment (Melanin)

Ramachandran Chelliah and Deog-Hwan Oh

 

99. Exploration and Characterization ofMelanin Pigment Produced by Actinomycetes

Puja Gupta, Madangchanok imchen, and Ranjith Kumavath

 

100. Isolation and Production of Prodigiosin Pigments from Streptomyces spp.

Leena Sebastian, Martin Paul, A., and Jayanthi, D.

 

101. Aerobic and Anaerobic Decolourization of Textile Dyes Using Actinobacteria

Ramasamy Vijayakumar and Suresh S.S. Raja

 

102. Bioleaching of heavy metals from e-waste using actinobacteria 

Gopikrishnan, V., K. Manigundan, PR. Meganathan, and M. Radhakrishnan

 

103. Biosynthesis and Characterization of Silver Nanoparticles From Actinobacteria

Vimala. R.T.Va,Rajivgandhi. Gb,d,S. Sridharana,Jayapriya. Mc,Ramachandran. Gd, Chenthis Kanisha. Cd, Manoharan. Nd,Wen-Jun Lib

 

104. Biosynthesis and Characterization of Gold Nanoparticles from Actinobacteria

Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, Wen-Jun Li

 

105. Antimicrobial Activity of Extracellular Green-Synthesized Nanoparticles By Actinobacteria

Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, and Wen-Jun Li

 

106. Antibiofilm Activity of Extracellular Green-Synthesized Nanoparticles By Actinobacteria

Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, Wen-Jun Li

 

107. Cytotoxic Activity of Extracellular Green Synthesized Nanoparticles by Actinobacteria

Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, and Wen-Jun Li

 

108. Sporicidal Activity of Extracellular Green-Synthesized Nanoparticles by Actinobacteria

Vimala. R.T.V, Rajivgandhi. G, S. Sridharan, Jayapriya. M, Ramachandran. G, Chenthis Kanisha. C, Manoharan. N, and Wen-Jun Li