Genomics of Cereal Crops

ISBN-13: 9781071625354 / Angielski / Miękka / 2023

Opis

This volume details different genomic methods and resources to explore cereal genomics. Chapters guide readers through crop genomes, Next Generation Sequencing (NGS) technologies, protocol for CRISPR editing, transgenic wheat, NGS approach, virus induced gene silencing (VIGS), genomic tools, computational prediction of ncRNAs (miRNAs & ceRNAs) in cereal crops, genotyping-by-sequencing (GBS), Bayesian method, single cell sequencing, genome-wide association study (GWAS), QTL interval mapping, whole genome bisulfite sequencing, genome imprinting, and methods for study the receptor-metabolite interaction.   Authoritative and cutting-edge, Genomics of Cereal Crops aims to be a useful and practical guide to new researchers and experts looking to expand their knowledge. 

Spis treści

1. An Update on Progress and Challenges of Crop Genomes

P. Hima Kumar, N. Urmila, M. Lakshmi Narasu, and S. Anil Kumar

 

2. Updates on Genomic Resources for Crop Improvement

Aditya Narayan, Pragya Chitkara, and Shailesh Kumar

 

3.  Next Generation Sequencing Technologies: Approaches and Applications for Crop   Improvement

Anupam Singh, G. Ramakrishna, Tanvi Kaila, Swati Saxena, Sandhya Sharma, Ambika B. Gaikwad, M. Z. Abdin, and Kishor Gaikwad

 

4. Check CRISPR editing events in transgenic wheat with Next-Generation Sequencing

   Junli Zhang

 

5. Virus Induced Gene Silencing: A Tool to Study Gene Function in Wheat

Gaganpreet Kaur Dhariwal, Raman Dhariwal, Michele Frick and André Laroche

 

6. Common Genomic Tools and Their Implementations in Genetic Improvement of Cereals

Megha Katoch, Ajay Kumar, Simranjeet Kaur, Anuj Rana, and Avneesh Kumar

 

7. Protocol for Identification and Annotation of Differentially Expressed Genes Using Reference-Based Transcriptomic Approach

Jyotika Bhati, Himanshu Avashthi, Anuj Kumar, Sayanti Guha Majumdar, Neeraj Budhlakoti, and Dwijesh Chandra Mishra

 

8. Transcriptome Data Analysis Using a De Novo Assembly Approach

Himanshu Avashthi, Jyotika Bhati, Shikha Mittal, Ambuj Srivastava, Neeraj Budhlakoti, Anuj Kumar, Pramod Wasudeo Ramteke, Dwijesh Chandra Mishra, and Anil Kumar

 

9. Protocol for In-Silico Identification and Functional Annotation of Abiotic Stress Responsive MicroRNAs in Crop Plants

Anuj Kumar, Mansi Sharma, Tinku Gautam, Prabina Kumar Meher, Jyotika Bhati, Himanshu Avashthi, Neeraj Budhlakoti, Dwijesh Chandra Mishra, Ulavappa Basavanneppa Angadi, and Krishna Pal Singh 

 

10.  Functional Annotation of miRNAs in Rice Using ARMOUR

Neeti Sanan-Mishra and Kavita Goswami

 

11. Identification of ceRNAs in Cereal Crops: A Computational Approach

Tinku Gautam, Hemant Sharma, Rakhi Singh, and Anuj Kumar

 

12. Genotyping-by-Sequencing (GBS) Method for Accelerating Marker-Assisted Selection (MAS) Program

Laavanya Rayaprolu, Santosh P Deshpande, and Rajeev Gupta

 

13. Genomic Selection Using Bayesian Methods: Models, Software and Application

Prabina Kumar Meher, Anuj Kumar, and Sukanta Kumar Pradhan

 

14. Approaches of Single Cell Analysis in Crops Improvement

Upasna Srivastava and Satendra Singh

 

15. Genome-Wide Association Study (GWAS) for Trait Analysis in Crops

Meenu Kumari, Lakesh Muduli, Prabin Kumar Meher, and Sukanta Kumar Pradhan

16. QTL Interval Mapping for Agronomic and Quality Traits in Crops

Vijay Gahlaut, Vandana Jaiswal, and Sanjay Kumar

 

 17.  Whole Genome Bisulfite Sequencing for Detection of DNA Methylation in Crops

Vijay Gahlaut, Vandana Jaiswal, and Sanjay Kumar

 

18. Tools and Techniques for Genomic Imprinting

Neeraj Budhlakoti, Sayanti Guha Majumdar, Amarkant Kushwaha, Chirag Maheshwari, Muzaffar Hasan, D C Mishra, Anuj Kumar, Jyotika Bhati, and Anil Rai

 

19. Computational Methods for Receptor-Metabolite Interaction Studies in Crops

Anu Dalal, Ankit Singh, Gourav Choudhir, Sushil Kumar, and Anuj Kumar