Fungal Genomics

ISBN-13: 9783642452178 / Angielski / Twarda / 2014 / 383 str.

Minou Nowrousian

Opis

The volume is divided into four sections, the first of which, Genome Sequences and Beyond, illustrates the impact of genome-based information and techniques on research ranging from model organisms like yeast to less-studied basal fungal lineages. Furthermore, it highlights novel types of analysis made possible by multi-genome comparisons as well as the impact of genomics on culture collections and vice versa. The second section, Cell and Developmental Biology, addresses questions that are important for fungal biology, e.g. the development of fungal fruiting bodies, and biology in general, e.g. chromatin organization and circadian rhythms. The third section, Genomics for Biotechnology, covers the search for plant biomass-converting enzymes in fungal genomes and work with industrially important fungi. The fourth section, focusing on Pathogenicity, offers chapters on the genomic analysis of plant and animal/human pathogens. It illustrates how genomics at all levels, from genome to metabolome, is used to study mechanisms of the interactions of fungi with other organisms.

Spis treści

Genome sequences and beyond

1    Yeast as a model for systems biology studies on complex diseases       Juan I. Castrillo

Steve G. Oliver

2    Genomics to study basal lineage fungal biology: phylogenomics suggest a common origin

Kerstin Voigt and Ekaterina Shelest

3    Phylogenomics to study fungal biology

Toni Gabaldon

4    Genome data drives change at culture collections

Kevin McCluskey, Aric Wiest and Kyria Boundy-Mills

Cell and developmental biology

5    Fungal chromatin and its role in regulation of gene expression

Michael Freitag

6    Photobiology and circadian clocks in Neurospora

Jennifer Loros

Jay Dunlap, Kevin Fuller and Jennifer Hurley

7    Genomics and transcriptomics to analyze fruiting body development

Minou Nowrousian

Genomics for biotechnology

8    Degradation and modification of plant biomass by fungi

Ronald P. de Vries, Mia R. Mäkelä and Kristiina S. Hilden

9    Transcriptomics of industrial filamentous fungi: a new view on regulation, physiology and application

Vera Meyer and Benjamin Nitsche

10  Genomics analysis of biocontrol species and industrial enzyme producers from the genus Trichoderma

Christian Kubicek, Monika Schmoll , Bernhard Seiboth and Irina Druzhinina

Pathogenicity

11  Application of genomics to the study of pathogenicity and development in Fusarium    Frances Trail

Donald Gardiner