DNA Symmetry: A Statistical View

ISBN-13: 9781498764957 / Angielski / Twarda / 2023 / 300 str.

Vera Afrexio (University of Aveiro Portu;Carlos A C Bastos (University of Aveiro ;Paulo J S G Ferreira (University of Avei

Opis

The main objective of this book is to discuss the statistical procedures used to evaluate DNA symmetry, also known as second Chargaff's parity rule and its extension. The symmetry phenomenon is related with DNA word composition analysis. The analysis of DNA symmetry can contribute to predicting regulatory elements, functional elements, motifs, detect/predict patterns in genome sequences or evaluate the relationship between species. The biological hypotheses are tested by Monte Carlo procedures and a simulation model to address DNA symmetry phenomenon is proposed.

Spis treści

Computational biology concepts. DNA structure. Most common DNA sequence analysis. DNA Word analysis. Global DNA Symmetry Analysis. Second Chargaff’s parity rule. DNA Symmetry phenomenon. Exceptional Symmetry phenomenon. Distance distribution of symmetric word pairs. Extreme symmetric word pairs. Local DNA Symmetry Analysis. Window analysis procedure. DNA sequence segmentation. DNA annotation vs symmetry phenomenon. Simulation of DNA symmetries. Sequence correlation structure vs symmetry phenomenon. Simulating biological structures and processes. Symmetry models evaluation.