Computational Science -- Iccs 2005: 5th International Conference, Atlanta, Ga, Usa, May 22-25, 2005, Proceedings, Part II

ISBN-13: 9783540260431 / Angielski / Miękka / 2005 / 1101 str.

V. S. Sunderam

Opis

The Fifth International Conference on Computational Science (ICCS 2005) held inAtlanta, Georgia, USA, May2225,2005, continuedinthetraditionofprevious conferences in the series: ICCS 2004 in Krakow, Poland; ICCS 2003 held sim- taneously at two locations, in Melbourne, Australia and St. Petersburg, Russia; ICCS 2002 in Amsterdam, The Netherlands; and ICCS 2001 in San Francisco, California, USA. Computational science is rapidly maturing as a mainstream discipline. It is central to an ever-expanding variety of ?elds in which computational methods and tools enable new discoveries with greater accuracy and speed. ICCS 2005 wasorganizedasaforumforscientistsfromthecoredisciplinesofcomputational science and numerous application areas to discuss and exchange ideas, results, and future directions. ICCS participants included researchers from many app- cation domains, including those interested in advanced computational methods for physics, chemistry, life sciences, engineering, economics and ?nance, arts and humanities, as well as computer system vendors and software developers. The primary objectives of this conference were to discuss problems and solutions in allareas, toidentifynewissues, toshapefuturedirectionsofresearch, andtohelp users apply various advanced computational techniques. The event highlighted recent developments in algorithms, computational kernels, next generation c- puting systems, tools, advanced numerical methods, data-driven systems, and emerging application ?elds, such as complex systems, ?nance, bioinformatics, computational aspects of wireless and mobile networks, graphics, and hybrid computation. Keynote lectures were delivered by John Drake High End Si- lation of the Climate and Development of Earth System Models; Marian Bubak Recent Developments in Computational Science and the CrossGrid Project; Alok Choudhary Scienti?c Data Management; and David Keyes Scienti?c Discovery through Advanced Computing."

Spis treści

Workshop On “High Performance Computing in Academia: Systems and Applications”.- Teaching High-Performance Computing on a High-Performance Cluster.- Teaching High Performance Computing Parallelizing a Real Computational Science Application.- Introducing Design Patterns, Graphical User Interfaces and Threads Within the Context of a High Performance Computing Application.- High Performance Computing Education for Students in Computational Engineering.- Integrating Teaching and Research in HPC: Experiences and Opportunities.- Education and Research Challenges in Parallel Computing.- Academic Challenges in Large-Scale Multiphysics Simulations.- Balancing Computational Science and Computer Science Research on a Terascale Computing Facility.- Computational Options for Bioinformatics Research in Evolutionary Biology.- Financial Computations on Clusters Using Web Services.- “Plug-and-Play” Cluster Computing HPC Designed for the Mainstream Scientist.- Building an HPC Watering Hole for Boulder Area Computational Science.- The Dartmouth Green Grid.- Resource-Aware Parallel Adaptive Computation for Clusters.- Workshop on “Tools for Program Development and Analysis in Computational Science”.- New Algorithms for Performance Trace Analysis Based on Compressed Complete Call Graphs.- PARADIS: Analysis of Transaction-Based Applications in Distributed Environments.- Automatic Tuning of Data Distribution Using Factoring in Master/Worker Applications.- DynTG: A Tool for Interactive, Dynamic Instrumentation.- Rapid Development of Application-Specific Network Performance Tests.- Providing Interoperability for Java-Oriented Monitoring Tools with JINEXT.- RDVIS: A Tool that Visualizes the Causes of Low Locality and Hints Program Optimizations.- CacheIn: A Toolset for Comprehensive Cache Inspection.- Optimization-Oriented Visualization of Cache Access Behavior.- Collecting and Exploiting Cache-Reuse Metrics.- Workshop on “Computer Graphics and Geometric Modeling, CGGM 2005”.- Modelling and Animating Hand Wrinkles.- Simulating Wrinkles in Facial Expressions on an Anatomy-Based Face.- A Multiresolutional Approach for Facial Motion Retargetting Using Subdivision Wavelets.- New 3D Graphics Rendering Engine Architecture for Direct Tessellation of Spline Surfaces.- Fast Water Animation Using the Wave Equation with Damping.- A Comparative Study of Acceleration Techniques for Geometric Visualization.- Building Chinese Ancient Architectures in Seconds.- Accelerated 2D Image Processing on GPUs.- Consistent Spherical Parameterization.- Mesh Smoothing via Adaptive Bilateral Filtering.- Towards a Bayesian Approach to Robust Finding Correspondences in Multiple View Geometry Environments.- Managing Deformable Objects in Cluster Rendering.- Revolute Quadric Decomposition of Canal Surfaces and Its Applications.- Adaptive Surface Modeling Using a Quadtree of Quadratic Finite Elements.- MC Slicing for Volume Rendering Applications.- Modelling and Sampling Ramified Objects with Substructure-Based Method.- Integration of Multiple Segmentation Based Environment Models.- On the Impulse Method for Cloth Animation.- Remeshing Triangle Meshes with Boundaries.- SACARI: An Immersive Remote Driving Interface for Autonomous Vehicles.- A 3D Model Retrieval Method Using 2D Freehand Sketches.- A 3D User Interface for Visualizing Neuron Location in Invertebrate Ganglia.- Workshop on “Modelling of Complex Systems by Cellular Automata”.- The Dynamics of General Fuzzy Cellular Automata.- A Cellular Automaton SIS Epidemiological Model with Spatially Clustered Recoveries.- Simulating Market Dynamics with CD++.- A Model of Virus Spreading Using Cell-DEVS.- A Cellular Automata Model of Competition in Technology Markets with Network Externalities.- Self-organizing Dynamics for Optimization.- Constructibility of Signal-Crossing Solutions in von Neumann 29-State Cellular Automata.- Evolutionary Discovery of Arbitrary Self-replicating Structures.- Modelling Ant Brood Tending Behavior with Cellular Automata.- A Realistic Cellular Automata Model to Simulate Traffic Flow at Urban Roundabouts.- Probing the Eddies of Dancing Emergence: Complexity and Abstract Painting.- Workshop on “Wireless and Mobile Systems”.- Enhanced TCP with End-to-End Bandwidth and Loss Differentiation Estimate over Heterogeneous Networks.- Content-Aware Automatic QoS Provisioning for UpnP AV-Based Multimedia Services over Wireless LANs.- Simulation Framework for Wireless Internet Access Networks.- WDM: An Energy-Efficient Multi-hop Routing Algorithm for Wireless Sensor Networks.- Forwarding Scheme Extension for Fast and Secure Handoff in Hierarchical MIPv6.- Back-Up Chord: Chord Ring Recovery Protocol for P2P File Sharing over MANETs.- PATM: Priority-Based Adaptive Topology Management for Efficient Routing in Ad Hoc Networks.- Practical and Provably-Secure Multicasting over High-Delay Networks.- A Novel IDS Agent Distributing Protocol for MANETs.- ID-Based Secure Session Key Exchange Scheme to Reduce Registration Delay with AAA in Mobile IP Networks.- An Efficient Wireless Resource Allocation Based on a Data Compressor Predictor.- A Seamless Handover Mechanism for IEEE 802.16e Broadband Wireless Access.- Fault Tolerant Coverage Model for Sensor Networks.- Detection Algorithms Based on Chip-Level Processing for DS/CDMA Code Acquisition in Fast Fading Channels.- Clustering-Based Distributed Precomputation for Quality-of-Service Routing.- Traffic Grooming Algorithm Using Shortest EDPs Table in WDM Mesh Networks.- Efficient Indexing of Moving Objects Using Time-Based Partitioning with R-Tree.- Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments.- A Power Efficient Routing Protocol in Wireless Sensor Networks.- Applying Mobile Agent to Intrusion Response for Ad Hoc Networks.- A Vertical Handoff Decision Process and Algorithm Based on Context Information in CDMA-WLAN Interworking.- Workshop on “Dynamic Data Driven Application Systems”.- Dynamic Data Driven Applications Systems: New Capabilities for Application Simulations and Measurements.- Dynamic Data Driven Methodologies for Multiphysics System Modeling and Simulation.- Towards Dynamically Adaptive Weather Analysis and Forecasting in LEAD.- Towards a Dynamic Data Driven Application System for Wildfire Simulation.- Multiscale Interpolation, Backward in Time Error Analysis for Data-Driven Contaminant Simulation.- Ensemble–Based Data Assimilation for Atmospheric Chemical Transport Models.- Towards Dynamic Data-Driven Optimization of Oil Well Placement.- High-Fidelity Simulation of Large-Scale Structures.- A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery.- Structure-Based Integrative Computational and Experimental Approach for the Optimization of Drug Design.- Simulation and Visualization of Air Flow Around Bat Wings During Flight.- Integrating Fire, Structure and Agent Models.- A Dynamic, Data-Driven, Decision Support System for Emergency Medical Services.- Dynamic Data Driven Coupling of Continuous and Discrete Methods for 3D Tracking.- Semi-automated Simulation Transformation for DDDAS.- The Development of Dependable and Survivable Grids.- On the Fundamental Tautology of Validating Data-Driven Models and Simulations.- Workshop on “Practical Aspects of High-Level Parallel Programming (PAPP)”.- Managing Heterogeneity in a Grid Parallel Haskell.- An Efficient Equi-semi-join Algorithm for Distributed Architectures.- Two Fundamental Concepts in Skeletal Parallel Programming.- A Formal Framework for Orthogonal Data and Control Parallelism Handling.- Empirical Parallel Performance Prediction from Semantics-Based Profiling.- Dynamic Memory Management in the Loci Framework.- Workshop on “New Computational Tools for Advancing Atmospheric and Oceanic Sciences”.- On Adaptive Mesh Refinement for Atmospheric Pollution Models.- Total Energy Singular Vectors for Atmospheric Chemical Transport Models.- Application of Static Adaptive Grid Techniques for Regional-Urban Multiscale Air Quality Modeling.- On the Accuracy of High-Order Finite Elements in Curvilinear Coordinates.- Analysis of Discrete Adjoints for Upwind Numerical Schemes.- The Impact of Background Error on Incomplete Observations for 4D-Var Data Assimilation with the FSU GSM.- International Workshop on Bioinformatics Research and Applications.- Disjoint Segments with Maximum Density.- Wiener Indices of Balanced Binary Trees.- What Makes the Arc-Preserving Subsequence Problem Hard?.- An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure Prediction.- Performance Evaluation of Protein Sequence Clustering Tools.- A Data-Adaptive Approach to cDNA Microarray Image Enhancement.- String Kernels of Imperfect Matches for Off-target Detection in RNA Interference.- A New Kernel Based on High-Scored Pairs of Tri-peptides and Its Application in Prediction of Protein Subcellular Localization.- Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides.- Phylogenetic Networks, Trees, and Clusters.- SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors.- Simultaneous Alignment and Structure Prediction of RNAs.- Clustering Using Adaptive Self-organizing Maps (ASOM) and Applications.- Experimental Analysis of a New Algorithm for Partial Haplotype Completion.- Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures.- Profiling and Searching for RNA Pseudoknot Structures in Genomes.- Integrating Text Chunking with Mixture Hidden Markov Models for Effective Biomedical Information Extraction.- k-Recombination Haplotype Inference in Pedigrees.- Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays.- A Parallel Implementation for Determining Genomic Distances Under Deletion and Insertion.- Phasing and Missing Data Recovery in Family Trios.- Highly Scalable Algorithms for Robust String Barcoding.- Optimal Group Testing Strktegies with Interval Queries and Their Application to Splice Site Detection.- Virtual Gene: A Gene Selection Algorithm for Sample Classification on Microarray Datasets.- Workshop on “Programming Grids and Metacomputing Systems – PGaMS2005”.- Bulk Synchronous Parallel ML: Modular Implementation and Performance Prediction.- Fast Expression Templates.- Solving Coupled Geoscience Problems on High Performance Computing Platforms.- H2O Metacomputing – Jini Lookup and Discovery.- User Experiences with Nuclear Physics Calculations on a H2O Metacomputing System and on the BEgrid.