DNA Computing: 9th International Workshop on DNA Based Computers, DNA9, Madison, WI, USA, June 1-3, 2003, revised Papers

ISBN-13: 9783540209300 / Angielski / Miękka / 2004 / 212 str.

Junghuei Chen;John Reif

Opis

This book constitutes the thoroughly refereed post-proceedings of the 9th International Workshop on DNA Based Computers, DNA9, held in Madison, Wisconsin, USA in June 2003.The 22 revised full papers presented were carefully selected during two rounds of reviewing and improvement from initially 60 submissions. The papers are organized in topical sections on new experiments and tools, theory, computer simulation and sequence design, self-assembly and autonomous molecular computation, experimental solutions, and new computing models.

Spis treści

New Experimental Tools.- A Lab-on-a-Chip Module for Bead Separation in DNA-Based Concept Learning.- Parallel Translation of DNA Clusters by VCSEL Array Trapping and Temperature Control with Laser Illumination.- Chemical Switching and Molecular Logic in Fluorescent-Labeled M-DNA.- RCA-Based Detection Methods for Resolution Refutation.- Theory.- Word Design for Molecular Computing: A Survey.- Time-Varying Distributed H Systems with Parallel Computations: The Problem Is Solved.- Deadlock Decidability in Partial Parallel P Systems.- Computer Simulation and Sequence Design.- Languages of DNA Based Code Words.- Secondary Structure Design of Multi-state DNA Machines Based on Sequential Structure Transitions.- Analyzing Secondary Structure Transition Paths of DNA/RNA Molecules.- Self-Assembly and Autonomous Molecular Computation.- Self-Assembled Circuit Patterns.- One Dimensional Boundaries for DNA Tile Self-Assembly.- Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly.- Experimental Solutions.- A DNA-Based Memory with In Vitro Learning and Associative Recall.- Efficiency and Reliability of Semantic Retrieval in DNA-Based Memories.- Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loop.- New Computing Models.- Mathematical Considerations in the Design of Microreactor-Based DNA Computers.- Towards a Re-programmable DNA Computer.- In Vitro Translation-Based Computations.- Autonomous Biomolecular Computer Modeled after Retroviral Replication.- Biomolecular Computing by Encoding of Regulated Phosphorylation-Dephosphorylation and Logic of Kinase-Phosphatase in Cells.- Conformational Addressing Using the Hairpin Structure of Single-Strand DNA.